American Statistical Association
New York City
Metropolitan Area Chapter

Memorial Sloan-Kettering Cancer Center
Biostatistics Seminar



Mithat Gönen
Department of Epidemiology & Biostatistics
Memorial Sloan-Kettering Cancer Center

ESTIMATION OF CELLULAR AND GENETIC DIVERSITY

Within-tumor heterogeneity has long been a focus in characterizing cancers. Recent advances in fluorescent in situ hybridization (FISH) have made it possible to examine copy numbers at cellular level and analyze diversity within tumor cells. This has brought various statistical challenges some of which were faced by ecologists before. In this talk, I will discuss the bias in Shannon's index, the most popular measure of diversity, due to the total number of types being unobservable. A maximum-entropy approach seems to reduce the bias when sample sizes are modest relative to the total number of types. Data from a recent publication on the diversity of in situ and invasive breast tumors will be used for demonstration.

This is joint work with Elza Erkip of New York University.


Date: Wednesday, September 14, 2011
Time: 4:00 - 5:00 P.M.
Location: Memorial Sloan-Kettering Cancer Center
Department of Epidemiology and Biostatistics
307 East 63rd Street
(between First and Second Avenues)
Room 331
New York, New York
Note: To gain access to the building, please follow the directions by the telephone in the foyer.

RESERVATIONS ARE NOT REQUIRED


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